If your wanting it look OEM you can find 2009 non-cvo headpipes; they do not have the cat. You could also just de-cat your headpipe (many how-to post on cvoharley) - not hard, just time consuming and for this no remap is required. Now, you may notice a slight difference in heat reduction but not much - most of the heat is in the HD tune which is on the lean side for epa purposes and why it's a must when when open up the AC. Using any of the major tuners you can correct this; the plug and play tuners enriches the tune to exceptable generic tolerances; other tuners like SERT and closed loop tuners allow you to fine tune.
Check out FullSAC. As for the dealer, from what I've experienced (no offense) most of the techs wouldn't think of looking to confirm unless they were lead to it - those experienced tech's would more than likely smell it
. If you're real concerned go talk with service manager.